STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pcal_1136PFAM: protein of unknown function DUF354; KEGG: pai:PAE2970 hypothetical protein. (329 aa)    
Predicted Functional Partners:
gltX
glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu).
       0.787
Pcal_1138
PFAM: Nucleotidyl transferase; KEGG: pai:PAE2968 sugar-phosphate nucleotidyl transferase, putative.
       0.776
Pcal_1135
KEGG: pai:PAE2971 hypothetical protein.
       0.757
Pcal_1139
KEGG: pai:PAE2967 hypothetical protein.
       0.560
Pcal_1140
KEGG: pai:PAE2966 hypothetical protein.
       0.560
Pcal_1141
KEGG: pai:PAE2965 hypothetical protein.
       0.560
Pcal_1142
KEGG: pai:PAE2964 hypothetical protein.
       0.560
Pcal_0803
Serine O-acetyltransferase; KEGG: pai:PAE1472 acetyl/acyl transferase related protein.
 
    0.545
Pcal_1665
SMART: metal-dependent phosphohydrolase, HD region; KEGG: pai:PAE2323 hypothetical protein.
  
     0.521
Pcal_1143
PFAM: CBS domain containing protein; KEGG: pai:PAE2961 conserved protein with 2 CBS domains.
       0.512
Your Current Organism:
Pyrobaculum calidifontis
NCBI taxonomy Id: 410359
Other names: P. calidifontis JCM 11548, Pyrobaculum calidifontis JCM 11548, Pyrobaculum calidifontis VA1, Pyrobaculum calidifontis str. JCM 11548, Pyrobaculum calidifontis strain JCM 11548
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.