STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pcal_1138PFAM: Nucleotidyl transferase; KEGG: pai:PAE2968 sugar-phosphate nucleotidyl transferase, putative. (227 aa)    
Predicted Functional Partners:
Pcal_0995
PFAM: translation initiation factor 2, alpha subunit; SMART: RNA binding S1 domain protein; KEGG: pai:PAE3032 translation initiation factor aIF-2 alpha subunit.
  
 0.907
Pcal_1377
PFAM: initiation factor 2B related; KEGG: pai:PAE1244 translation initiation factor aIF-2B subunit, conjectural; Belongs to the eIF-2B alpha/beta/delta subunits family.
   
 0.899
Pcal_0242
Translation initiation factor 2 subunit gamma (aeIF-2g); PFAM: protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; KEGG: pai:PAE0064 translation initiation factor aIF-2 gamma subunit, putative.
   
 0.815
Pcal_0547
PFAM: protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; KEGG: pai:PAE1764 GTP-binding protein.
   
 0.813
gltX
glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu).
  
   0.811
Pcal_1136
PFAM: protein of unknown function DUF354; KEGG: pai:PAE2970 hypothetical protein.
       0.776
Pcal_1135
KEGG: pai:PAE2971 hypothetical protein.
       0.757
Pcal_0404
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: pai:PAE2053 pleiotropic regulatory protein, conjectural; Belongs to the DegT/DnrJ/EryC1 family.
  
  
 0.722
Pcal_0885
PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: pai:PAE1922 UDP-glucose 4-epimerase.
 
 
 0.678
Pcal_1037
PFAM: transferase hexapeptide repeat containing protein; Nucleotidyl transferase; KEGG: pai:PAE3430 glucose-1-phosphate adenylyltransferase.
  
     0.649
Your Current Organism:
Pyrobaculum calidifontis
NCBI taxonomy Id: 410359
Other names: P. calidifontis JCM 11548, Pyrobaculum calidifontis JCM 11548, Pyrobaculum calidifontis VA1, Pyrobaculum calidifontis str. JCM 11548, Pyrobaculum calidifontis strain JCM 11548
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