STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pcal_1643KEGG: pai:PAE2290 membrane protein, putative. (866 aa)    
Predicted Functional Partners:
Pcal_1645
PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pai:PAE2293 hypothetical protein.
       0.778
Pcal_1644
KEGG: pai:PAE2291 hypothetical protein.
       0.773
Pcal_1646
KEGG: pai:PAE2294 hypothetical protein.
       0.727
Pcal_1647
PFAM: PP-loop domain protein; KEGG: pai:PAE2295 hypothetical protein.
       0.727
Pcal_1642
PFAM: protein of unknown function DUF214; KEGG: pai:PAE2288 putative ABC transporter permease protein.
   
   0.615
Pcal_1641
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pai:PAE2286 ABC transporter ATP-binding protein, putative.
       0.588
Pcal_1640
KEGG: pai:PAE2285 hypothetical protein.
       0.582
Your Current Organism:
Pyrobaculum calidifontis
NCBI taxonomy Id: 410359
Other names: P. calidifontis JCM 11548, Pyrobaculum calidifontis JCM 11548, Pyrobaculum calidifontis VA1, Pyrobaculum calidifontis str. JCM 11548, Pyrobaculum calidifontis strain JCM 11548
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.