STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pcal_1744Oligopeptide/dipeptide ABC transporter, ATPase subunit; KEGG: pai:PAE3317 oligopeptide transport ATP-binding protein, putative; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase. (322 aa)    
Predicted Functional Partners:
Pcal_1745
Oligopeptide/dipeptide ABC transporter, ATPase subunit; KEGG: pai:PAE3316 oligopeptide transport ATP-binding protein, putative; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase.
 
 
 
0.995
Pcal_0973
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pai:PAE3086 oligopeptide ABC transporter, permease protein.
  
 0.994
Pcal_1229
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pai:PAE1298 dipeptide ABC transporter, permease protein.
  
 0.990
Pcal_0421
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pai:PAE2392 dipeptide transport permease.
  
 0.984
Pcal_0974
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pai:PAE3087 oligopeptide ABC transporter, permease protein.
 
 0.937
Pcal_1230
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pai:PAE1299 dipeptide ABC transporter, permease protein.
 
 0.924
Pcal_0420
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pai:PAE2393 dipeptide transport permease.
 
 0.917
Pcal_0679
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pai:PAE1066 taurine(sulfate) transport ATP-binding protein, putative.
    
0.904
Pcal_0845
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pai:PAE1389 branched-chain amino acid transport ATP-binding protein; TC 3.A.1.4.-.
    
0.894
Pcal_1227
KEGG: pai:PAE1296 dipeptide transport ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase.
 
   
0.754
Your Current Organism:
Pyrobaculum calidifontis
NCBI taxonomy Id: 410359
Other names: P. calidifontis JCM 11548, Pyrobaculum calidifontis JCM 11548, Pyrobaculum calidifontis VA1, Pyrobaculum calidifontis str. JCM 11548, Pyrobaculum calidifontis strain JCM 11548
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