node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Pcal_1106 | Pcal_1181 | Pcal_1106 | Pcal_1181 | rRNA biogenesis protein Nop56/Nop58; PFAM: Pre-mRNA processing ribonucleoprotein, binding region; NOSIC; KEGG: pai:PAE3232 nop family pre-rRNA processing protein. | PFAM: KH, type 1, domain protein; KEGG: pai:PAE3473 hypothetical protein. | 0.986 |
Pcal_1106 | csl4 | Pcal_1106 | Pcal_1587 | rRNA biogenesis protein Nop56/Nop58; PFAM: Pre-mRNA processing ribonucleoprotein, binding region; NOSIC; KEGG: pai:PAE3232 nop family pre-rRNA processing protein. | Conserved protein (RNA polymerase related); Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Helpful for the interaction of the exosome with A-poor RNAs. | 0.929 |
Pcal_1106 | nep1 | Pcal_1106 | Pcal_1590 | rRNA biogenesis protein Nop56/Nop58; PFAM: Pre-mRNA processing ribonucleoprotein, binding region; NOSIC; KEGG: pai:PAE3232 nop family pre-rRNA processing protein. | Suppressor Mra1; Methyltransferase involved in ribosomal biogenesis. Specifically catalyzes the N1-methylation of the pseudouridine corresponding to position 914 in M.jannaschii 16S rRNA. | 0.999 |
Pcal_1106 | rps11 | Pcal_1106 | Pcal_1813 | rRNA biogenesis protein Nop56/Nop58; PFAM: Pre-mRNA processing ribonucleoprotein, binding region; NOSIC; KEGG: pai:PAE3232 nop family pre-rRNA processing protein. | SSU ribosomal protein S11P; Located on the platform of the 30S subunit. Belongs to the universal ribosomal protein uS11 family. | 0.966 |
Pcal_1106 | rps3ae | Pcal_1106 | Pcal_1182 | rRNA biogenesis protein Nop56/Nop58; PFAM: Pre-mRNA processing ribonucleoprotein, binding region; NOSIC; KEGG: pai:PAE3232 nop family pre-rRNA processing protein. | PFAM: ribosomal protein S3Ae; KEGG: pai:PAE3472 ribosomal protein S3; Belongs to the eukaryotic ribosomal protein eS1 family. | 0.983 |
Pcal_1106 | rps4 | Pcal_1106 | Pcal_0971 | rRNA biogenesis protein Nop56/Nop58; PFAM: Pre-mRNA processing ribonucleoprotein, binding region; NOSIC; KEGG: pai:PAE3232 nop family pre-rRNA processing protein. | SSU ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.972 |
Pcal_1106 | rps6e | Pcal_1106 | Pcal_0821 | rRNA biogenesis protein Nop56/Nop58; PFAM: Pre-mRNA processing ribonucleoprotein, binding region; NOSIC; KEGG: pai:PAE3232 nop family pre-rRNA processing protein. | PFAM: ribosomal protein S6e; KEGG: pai:PAE1505 ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family. | 0.978 |
Pcal_1106 | rsmA | Pcal_1106 | Pcal_1104 | rRNA biogenesis protein Nop56/Nop58; PFAM: Pre-mRNA processing ribonucleoprotein, binding region; NOSIC; KEGG: pai:PAE3232 nop family pre-rRNA processing protein. | Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. RsmA subfamily. | 0.967 |
Pcal_1106 | rtcA | Pcal_1106 | Pcal_2009 | rRNA biogenesis protein Nop56/Nop58; PFAM: Pre-mRNA processing ribonucleoprotein, binding region; NOSIC; KEGG: pai:PAE3232 nop family pre-rRNA processing protein. | RNA-3'-phosphate cyclase; Catalyzes the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. The mechanism of action of the enzyme occurs in 3 steps: (A) adenylation of the enzyme by ATP; (B) transfer of adenylate to an RNA-N3'P to produce RNA-N3'PP5'A; (C) and attack of the adjacent 2'-hydroxyl on the 3'-phosphorus in the diester linkage to produce the cyclic end product. The biological role of this enzyme is unknown but it is likely to function in some aspects of cellular RNA processing. | 0.957 |
Pcal_1106 | tmcA | Pcal_1106 | Pcal_0831 | rRNA biogenesis protein Nop56/Nop58; PFAM: Pre-mRNA processing ribonucleoprotein, binding region; NOSIC; KEGG: pai:PAE3232 nop family pre-rRNA processing protein. | tRNA(Met)-cytidine N(4)-acetyltransferase; Catalyzes the formation of N(4)-acetylcytidine (ac(4)C) at the wobble position of tRNA(Met), by using acetyl-CoA as an acetyl donor and ATP (or GTP). | 0.999 |
Pcal_1181 | Pcal_1106 | Pcal_1181 | Pcal_1106 | PFAM: KH, type 1, domain protein; KEGG: pai:PAE3473 hypothetical protein. | rRNA biogenesis protein Nop56/Nop58; PFAM: Pre-mRNA processing ribonucleoprotein, binding region; NOSIC; KEGG: pai:PAE3232 nop family pre-rRNA processing protein. | 0.986 |
Pcal_1181 | csl4 | Pcal_1181 | Pcal_1587 | PFAM: KH, type 1, domain protein; KEGG: pai:PAE3473 hypothetical protein. | Conserved protein (RNA polymerase related); Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Helpful for the interaction of the exosome with A-poor RNAs. | 0.966 |
Pcal_1181 | nep1 | Pcal_1181 | Pcal_1590 | PFAM: KH, type 1, domain protein; KEGG: pai:PAE3473 hypothetical protein. | Suppressor Mra1; Methyltransferase involved in ribosomal biogenesis. Specifically catalyzes the N1-methylation of the pseudouridine corresponding to position 914 in M.jannaschii 16S rRNA. | 0.999 |
Pcal_1181 | rps11 | Pcal_1181 | Pcal_1813 | PFAM: KH, type 1, domain protein; KEGG: pai:PAE3473 hypothetical protein. | SSU ribosomal protein S11P; Located on the platform of the 30S subunit. Belongs to the universal ribosomal protein uS11 family. | 0.999 |
Pcal_1181 | rps3ae | Pcal_1181 | Pcal_1182 | PFAM: KH, type 1, domain protein; KEGG: pai:PAE3473 hypothetical protein. | PFAM: ribosomal protein S3Ae; KEGG: pai:PAE3472 ribosomal protein S3; Belongs to the eukaryotic ribosomal protein eS1 family. | 0.957 |
Pcal_1181 | rps4 | Pcal_1181 | Pcal_0971 | PFAM: KH, type 1, domain protein; KEGG: pai:PAE3473 hypothetical protein. | SSU ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.999 |
Pcal_1181 | rps6e | Pcal_1181 | Pcal_0821 | PFAM: KH, type 1, domain protein; KEGG: pai:PAE3473 hypothetical protein. | PFAM: ribosomal protein S6e; KEGG: pai:PAE1505 ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family. | 0.999 |
Pcal_1181 | rsmA | Pcal_1181 | Pcal_1104 | PFAM: KH, type 1, domain protein; KEGG: pai:PAE3473 hypothetical protein. | Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. RsmA subfamily. | 0.857 |
Pcal_1181 | rtcA | Pcal_1181 | Pcal_2009 | PFAM: KH, type 1, domain protein; KEGG: pai:PAE3473 hypothetical protein. | RNA-3'-phosphate cyclase; Catalyzes the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. The mechanism of action of the enzyme occurs in 3 steps: (A) adenylation of the enzyme by ATP; (B) transfer of adenylate to an RNA-N3'P to produce RNA-N3'PP5'A; (C) and attack of the adjacent 2'-hydroxyl on the 3'-phosphorus in the diester linkage to produce the cyclic end product. The biological role of this enzyme is unknown but it is likely to function in some aspects of cellular RNA processing. | 0.970 |
Pcal_1181 | tmcA | Pcal_1181 | Pcal_0831 | PFAM: KH, type 1, domain protein; KEGG: pai:PAE3473 hypothetical protein. | tRNA(Met)-cytidine N(4)-acetyltransferase; Catalyzes the formation of N(4)-acetylcytidine (ac(4)C) at the wobble position of tRNA(Met), by using acetyl-CoA as an acetyl donor and ATP (or GTP). | 0.999 |