Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GFO_0329 | sir | GFO_0329 | GFO_0327 | Siroheme synthase. | Ferredoxin-sulfite reductase; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. | 0.947 |
GFO_0329 | trxB-2 | GFO_0329 | GFO_0330 | Siroheme synthase. | Thioredoxin reductase. | 0.798 |
GFO_0376 | GFO_2536 | GFO_0376 | GFO_2536 | FAD-dependent pyridine nucleotide-disulfde oxidoreductase. | Peroxiredoxin. | 0.568 |
GFO_0376 | fdxB | GFO_0376 | GFO_0126 | FAD-dependent pyridine nucleotide-disulfde oxidoreductase. | 2Fe-2S ferredoxin. | 0.413 |
GFO_0376 | mdeA | GFO_0376 | GFO_2175 | FAD-dependent pyridine nucleotide-disulfde oxidoreductase. | Methionine gamma-lyase. | 0.903 |
GFO_0376 | moeB | GFO_0376 | GFO_0451 | FAD-dependent pyridine nucleotide-disulfde oxidoreductase. | Molybdenum cofactor biosynthesis protein. | 0.578 |
GFO_0376 | sufS | GFO_0376 | GFO_3130 | FAD-dependent pyridine nucleotide-disulfde oxidoreductase. | Cysteine desulfurase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine. | 0.903 |
GFO_0376 | trxB | GFO_0376 | GFO_0125 | FAD-dependent pyridine nucleotide-disulfde oxidoreductase. | Thioredoxin reductase. | 0.900 |
GFO_0376 | trxB-2 | GFO_0376 | GFO_0330 | FAD-dependent pyridine nucleotide-disulfde oxidoreductase. | Thioredoxin reductase. | 0.900 |
GFO_0376 | tsaA | GFO_0376 | GFO_2177 | FAD-dependent pyridine nucleotide-disulfde oxidoreductase. | Peroxiredoxin. | 0.568 |
GFO_2536 | GFO_0376 | GFO_2536 | GFO_0376 | Peroxiredoxin. | FAD-dependent pyridine nucleotide-disulfde oxidoreductase. | 0.568 |
GFO_2536 | trxB | GFO_2536 | GFO_0125 | Peroxiredoxin. | Thioredoxin reductase. | 0.568 |
GFO_2536 | trxB-2 | GFO_2536 | GFO_0330 | Peroxiredoxin. | Thioredoxin reductase. | 0.568 |
fdxB | GFO_0376 | GFO_0126 | GFO_0376 | 2Fe-2S ferredoxin. | FAD-dependent pyridine nucleotide-disulfde oxidoreductase. | 0.413 |
fdxB | sir | GFO_0126 | GFO_0327 | 2Fe-2S ferredoxin. | Ferredoxin-sulfite reductase; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. | 0.726 |
fdxB | trxB | GFO_0126 | GFO_0125 | 2Fe-2S ferredoxin. | Thioredoxin reductase. | 0.935 |
fdxB | trxB-2 | GFO_0126 | GFO_0330 | 2Fe-2S ferredoxin. | Thioredoxin reductase. | 0.861 |
mdeA | GFO_0376 | GFO_2175 | GFO_0376 | Methionine gamma-lyase. | FAD-dependent pyridine nucleotide-disulfde oxidoreductase. | 0.903 |
mdeA | trxB | GFO_2175 | GFO_0125 | Methionine gamma-lyase. | Thioredoxin reductase. | 0.903 |
mdeA | trxB-2 | GFO_2175 | GFO_0330 | Methionine gamma-lyase. | Thioredoxin reductase. | 0.903 |
page 1 of 3