STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GFO_1296Conserved hypothetical protein, membrane. (422 aa)    
Predicted Functional Partners:
GFO_1300
Conserved hypothetical protein, membrane or secreted.
 
     0.910
GFO_1299
Conserved hypothetical protein, membrane.
 
     0.903
GFO_1295
HlyD family secretion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
     0.894
GFO_1297
Hypothetical protein.
       0.732
GFO_1294
AcrB/AcrD/AcrF family heavy metal cation efflux protein containing OEP domains; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
 0.704
GFO_1298
Secreted protein.
       0.646
GFO_1224
Two-component system sensor histidine kinase.
  
     0.573
GFO_1216
Secreted PAP2 superfamily protein.
  
     0.535
GFO_2426
Phage tail tape measure protein.
  
     0.530
GFO_3455
PAP2 superfamily membrane protein.
  
     0.488
Your Current Organism:
Gramella forsetii
NCBI taxonomy Id: 411154
Other names: Cytophaga sp. KT0803, G. forsetii KT0803, Gramella forsetii KT0803, Gramella forsetii str. KT0803, Gramella forsetii strain KT0803
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.