Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GFO_1794 | cysE | GFO_1794 | GFO_1531 | Cysteine synthase/cystathionine beta-synthase. | Serine O-acetyltransferase. | 0.968 |
GFO_1794 | cysS | GFO_1794 | GFO_2741 | Cysteine synthase/cystathionine beta-synthase. | cysteinyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. | 0.834 |
GFO_2742 | cysS | GFO_2742 | GFO_2741 | Protein containing DUF37; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | cysteinyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. | 0.818 |
GFO_2742 | folE-2 | GFO_2742 | GFO_2740 | Protein containing DUF37; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | GTP cyclohydrolase I. | 0.717 |
GFO_2742 | serS | GFO_2742 | GFO_3506 | Protein containing DUF37; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | seryl-tRNA synthetase. | 0.654 |
argS | cysS | GFO_2798 | GFO_2741 | arginyl-tRNA synthetase. | cysteinyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. | 0.761 |
argS | metG | GFO_2798 | GFO_3100 | arginyl-tRNA synthetase. | methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | 0.965 |
argS | serS | GFO_2798 | GFO_3506 | arginyl-tRNA synthetase. | seryl-tRNA synthetase. | 0.742 |
argS | thrS | GFO_2798 | GFO_0605 | arginyl-tRNA synthetase. | threonyl-tRNA synthetase; Catalyzes the attachment of threonine to tRNA(Thr) in a two- step reaction: L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr). | 0.677 |
cysE | GFO_1794 | GFO_1531 | GFO_1794 | Serine O-acetyltransferase. | Cysteine synthase/cystathionine beta-synthase. | 0.968 |
cysE | cysKM | GFO_1531 | GFO_1532 | Serine O-acetyltransferase. | Cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family. | 0.998 |
cysE | cysS | GFO_1531 | GFO_2741 | Serine O-acetyltransferase. | cysteinyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. | 0.986 |
cysKM | cysE | GFO_1532 | GFO_1531 | Cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family. | Serine O-acetyltransferase. | 0.998 |
cysKM | cysS | GFO_1532 | GFO_2741 | Cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family. | cysteinyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. | 0.914 |
cysS | GFO_1794 | GFO_2741 | GFO_1794 | cysteinyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. | Cysteine synthase/cystathionine beta-synthase. | 0.834 |
cysS | GFO_2742 | GFO_2741 | GFO_2742 | cysteinyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. | Protein containing DUF37; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | 0.818 |
cysS | argS | GFO_2741 | GFO_2798 | cysteinyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. | arginyl-tRNA synthetase. | 0.761 |
cysS | cysE | GFO_2741 | GFO_1531 | cysteinyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. | Serine O-acetyltransferase. | 0.986 |
cysS | cysKM | GFO_2741 | GFO_1532 | cysteinyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. | Cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family. | 0.914 |
cysS | folE-2 | GFO_2741 | GFO_2740 | cysteinyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. | GTP cyclohydrolase I. | 0.758 |
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