Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GFO_0972 | GFO_1269 | GFO_0972 | GFO_1269 | Metallo-beta-lactamase/rhodanese-like domain protein. | Metallo-beta-lactamase/rhodanese-like domain protein. | 0.969 |
GFO_0972 | GFO_1347 | GFO_0972 | GFO_1347 | Metallo-beta-lactamase/rhodanese-like domain protein. | Metallo-beta-lactamase/rhodanese-like domain protein. | 0.976 |
GFO_0972 | mraW | GFO_0972 | GFO_2775 | Metallo-beta-lactamase/rhodanese-like domain protein. | S-adenosyl-methyltransferase MraW; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA. | 0.845 |
GFO_1269 | GFO_0972 | GFO_1269 | GFO_0972 | Metallo-beta-lactamase/rhodanese-like domain protein. | Metallo-beta-lactamase/rhodanese-like domain protein. | 0.969 |
GFO_1269 | GFO_1347 | GFO_1269 | GFO_1347 | Metallo-beta-lactamase/rhodanese-like domain protein. | Metallo-beta-lactamase/rhodanese-like domain protein. | 0.976 |
GFO_1269 | mraW | GFO_1269 | GFO_2775 | Metallo-beta-lactamase/rhodanese-like domain protein. | S-adenosyl-methyltransferase MraW; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA. | 0.845 |
GFO_1347 | GFO_0972 | GFO_1347 | GFO_0972 | Metallo-beta-lactamase/rhodanese-like domain protein. | Metallo-beta-lactamase/rhodanese-like domain protein. | 0.976 |
GFO_1347 | GFO_1269 | GFO_1347 | GFO_1269 | Metallo-beta-lactamase/rhodanese-like domain protein. | Metallo-beta-lactamase/rhodanese-like domain protein. | 0.976 |
GFO_1347 | mraW | GFO_1347 | GFO_2775 | Metallo-beta-lactamase/rhodanese-like domain protein. | S-adenosyl-methyltransferase MraW; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA. | 0.845 |
GFO_2774 | ftsI | GFO_2774 | GFO_2773 | Secreted protein. | FtsI-like transpeptidase/penicillin-binding protein. | 0.893 |
GFO_2774 | mraW | GFO_2774 | GFO_2775 | Secreted protein. | S-adenosyl-methyltransferase MraW; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA. | 0.822 |
GFO_2774 | mraY | GFO_2774 | GFO_2771 | Secreted protein. | phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily. | 0.822 |
GFO_2774 | mraZ | GFO_2774 | GFO_2776 | Secreted protein. | MraZ protein; Belongs to the MraZ family. | 0.822 |
GFO_2774 | murD | GFO_2774 | GFO_2770 | Secreted protein. | UDP-N-acetylmuramoylalanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family. | 0.818 |
GFO_2774 | murE | GFO_2774 | GFO_2772 | Secreted protein. | UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily. | 0.826 |
ftsI | GFO_2774 | GFO_2773 | GFO_2774 | FtsI-like transpeptidase/penicillin-binding protein. | Secreted protein. | 0.893 |
ftsI | mraW | GFO_2773 | GFO_2775 | FtsI-like transpeptidase/penicillin-binding protein. | S-adenosyl-methyltransferase MraW; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA. | 0.883 |
ftsI | mraY | GFO_2773 | GFO_2771 | FtsI-like transpeptidase/penicillin-binding protein. | phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily. | 0.969 |
ftsI | mraZ | GFO_2773 | GFO_2776 | FtsI-like transpeptidase/penicillin-binding protein. | MraZ protein; Belongs to the MraZ family. | 0.890 |
ftsI | murD | GFO_2773 | GFO_2770 | FtsI-like transpeptidase/penicillin-binding protein. | UDP-N-acetylmuramoylalanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family. | 0.971 |
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