Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GFO_2314 | holB | GFO_2314 | GFO_3295 | DNA polymerase III subunit delta. | DNA polymerase III subunit delta'. | 0.990 |
GFO_2314 | recO | GFO_2314 | GFO_3185 | DNA polymerase III subunit delta. | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. | 0.616 |
GFO_2708 | GFO_3182 | GFO_2708 | GFO_3182 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.750 |
GFO_2708 | GFO_3531 | GFO_2708 | GFO_3531 | Conserved hypothetical protein. | Conserved hypothetical protein, secreted. | 0.667 |
GFO_2708 | recO | GFO_2708 | GFO_3185 | Conserved hypothetical protein. | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. | 0.575 |
GFO_3182 | GFO_2708 | GFO_3182 | GFO_2708 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.750 |
GFO_3182 | GFO_3184 | GFO_3182 | GFO_3184 | Conserved hypothetical protein. | TonB-dependent outer membrane receptor. | 0.417 |
GFO_3182 | GFO_3531 | GFO_3182 | GFO_3531 | Conserved hypothetical protein. | Conserved hypothetical protein, secreted. | 0.552 |
GFO_3182 | recO | GFO_3182 | GFO_3185 | Conserved hypothetical protein. | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. | 0.607 |
GFO_3184 | GFO_3182 | GFO_3184 | GFO_3182 | TonB-dependent outer membrane receptor. | Conserved hypothetical protein. | 0.417 |
GFO_3184 | gdhA-2 | GFO_3184 | GFO_3186 | TonB-dependent outer membrane receptor. | Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | 0.556 |
GFO_3184 | recO | GFO_3184 | GFO_3185 | TonB-dependent outer membrane receptor. | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. | 0.787 |
GFO_3531 | GFO_2708 | GFO_3531 | GFO_2708 | Conserved hypothetical protein, secreted. | Conserved hypothetical protein. | 0.667 |
GFO_3531 | GFO_3182 | GFO_3531 | GFO_3182 | Conserved hypothetical protein, secreted. | Conserved hypothetical protein. | 0.552 |
GFO_3531 | holB | GFO_3531 | GFO_3295 | Conserved hypothetical protein, secreted. | DNA polymerase III subunit delta'. | 0.607 |
GFO_3531 | recO | GFO_3531 | GFO_3185 | Conserved hypothetical protein, secreted. | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. | 0.729 |
era | phoH | GFO_2991 | GFO_1909 | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | Phosphate starvation-inducible protein. | 0.491 |
era | recO | GFO_2991 | GFO_3185 | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. | 0.640 |
gdhA-2 | GFO_3184 | GFO_3186 | GFO_3184 | Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | TonB-dependent outer membrane receptor. | 0.556 |
gdhA-2 | recO | GFO_3186 | GFO_3185 | Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. | 0.575 |
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