Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GFO_3222 | GFO_3227 | GFO_3222 | GFO_3227 | Protein containing AraC type HTH domain. | Hypothetical protein. | 0.476 |
GFO_3222 | hemA | GFO_3222 | GFO_3223 | Protein containing AraC type HTH domain. | glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). | 0.625 |
GFO_3222 | hemC | GFO_3222 | GFO_3224 | Protein containing AraC type HTH domain. | Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family. | 0.546 |
GFO_3222 | hemD-2 | GFO_3222 | GFO_3225 | Protein containing AraC type HTH domain. | uroporphyrinogen-III synthase. | 0.594 |
GFO_3222 | hemE | GFO_3222 | GFO_3226 | Protein containing AraC type HTH domain. | Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III. | 0.504 |
GFO_3222 | hemF | GFO_3222 | GFO_3228 | Protein containing AraC type HTH domain. | Coproporphyrinogen III oxidase. | 0.473 |
GFO_3227 | GFO_3222 | GFO_3227 | GFO_3222 | Hypothetical protein. | Protein containing AraC type HTH domain. | 0.476 |
GFO_3227 | hemA | GFO_3227 | GFO_3223 | Hypothetical protein. | glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). | 0.755 |
GFO_3227 | hemB | GFO_3227 | GFO_3230 | Hypothetical protein. | Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family. | 0.520 |
GFO_3227 | hemC | GFO_3227 | GFO_3224 | Hypothetical protein. | Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family. | 0.755 |
GFO_3227 | hemD-2 | GFO_3227 | GFO_3225 | Hypothetical protein. | uroporphyrinogen-III synthase. | 0.845 |
GFO_3227 | hemE | GFO_3227 | GFO_3226 | Hypothetical protein. | Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III. | 0.797 |
GFO_3227 | hemF | GFO_3227 | GFO_3228 | Hypothetical protein. | Coproporphyrinogen III oxidase. | 0.777 |
corA | hemA | GFO_0328 | GFO_3223 | uroporphyrin-III C-methyltransferase. | glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). | 0.746 |
corA | hemB | GFO_0328 | GFO_3230 | uroporphyrin-III C-methyltransferase. | Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family. | 0.895 |
corA | hemC | GFO_0328 | GFO_3224 | uroporphyrin-III C-methyltransferase. | Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family. | 0.989 |
corA | hemD-2 | GFO_0328 | GFO_3225 | uroporphyrin-III C-methyltransferase. | uroporphyrinogen-III synthase. | 0.920 |
corA | hemE | GFO_0328 | GFO_3226 | uroporphyrin-III C-methyltransferase. | Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III. | 0.926 |
corA | hemL | GFO_0328 | GFO_0240 | uroporphyrin-III C-methyltransferase. | Glutamate-1-semialdehyde 2,1-aminomutase. | 0.663 |
gltX | hemA | GFO_3302 | GFO_3223 | glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily. | glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). | 0.911 |
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