M1BQ90_SOLTU protein (Solanum tuberosum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

M1BQ90_SOLTU

WD_REPEATS_REGION domain-containing protein. (701 aa)

Predicted Functional Partners:

M0ZX76_SOLTU

0.483

M1B8I9_SOLTU

0.474

M1BAX3_SOLTU

0.470

M1B9R4_SOLTU

0.461

M1A2W4_SOLTU

0.456

M1BF37_SOLTU

0.453

M1BL19_SOLTU

0.451

M0ZII4_SOLTU

0.443

M1B4U2_SOLTU

0.442

M1ADP7_SOLTU

0.439

Your Current Organism:

Solanum tuberosum

NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
M0ZII4_SOLTU	M0ZX76_SOLTU	M0ZII4	M0ZX76	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.599
M0ZII4_SOLTU	M1A2W4_SOLTU	M0ZII4	M1A2W4	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.562
M0ZII4_SOLTU	M1ADP7_SOLTU	M0ZII4	M1ADP7	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.435
M0ZII4_SOLTU	M1B4U2_SOLTU	M0ZII4	M1B4U2	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.502
M0ZII4_SOLTU	M1B8I9_SOLTU	M0ZII4	M1B8I9	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.543
M0ZII4_SOLTU	M1B9R4_SOLTU	M0ZII4	M1B9R4	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.521
M0ZII4_SOLTU	M1BAX3_SOLTU	M0ZII4	M1BAX3	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.542
M0ZII4_SOLTU	M1BF37_SOLTU	M0ZII4	M1BF37	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.510
M0ZII4_SOLTU	M1BL19_SOLTU	M0ZII4	M1BL19	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.546
M0ZII4_SOLTU	M1BQ90_SOLTU	M0ZII4	M1BQ90	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.443
M0ZX76_SOLTU	M0ZII4_SOLTU	M0ZX76	M0ZII4	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.599
M0ZX76_SOLTU	M1A2W4_SOLTU	M0ZX76	M1A2W4	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.598
M0ZX76_SOLTU	M1ADP7_SOLTU	M0ZX76	M1ADP7	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.856
M0ZX76_SOLTU	M1B4U2_SOLTU	M0ZX76	M1B4U2	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.516
M0ZX76_SOLTU	M1BAX3_SOLTU	M0ZX76	M1BAX3	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.533
M0ZX76_SOLTU	M1BL19_SOLTU	M0ZX76	M1BL19	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.603
M0ZX76_SOLTU	M1BQ90_SOLTU	M0ZX76	M1BQ90	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.483
M1A2W4_SOLTU	M0ZII4_SOLTU	M1A2W4	M0ZII4	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.562
M1A2W4_SOLTU	M0ZX76_SOLTU	M1A2W4	M0ZX76	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.598
M1A2W4_SOLTU	M1ADP7_SOLTU	M1A2W4	M1ADP7	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.438