M1CB83_SOLTU protein (Solanum tuberosum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

M1CB83_SOLTU

Uncharacterized protein. (549 aa)

Predicted Functional Partners:

M1CZM1_SOLTU

0.651

M1BRD9_SOLTU

0.549

M0ZJD1_SOLTU

0.548

M0ZGU6_SOLTU

0.542

M1BX71_SOLTU

0.512

M1D6F0_SOLTU

0.473

M1C3P0_SOLTU

0.468

M0ZSJ5_SOLTU

0.461

M1CTJ1_SOLTU

0.452

M1BFI0_SOLTU

0.451

Your Current Organism:

Solanum tuberosum

NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
M0ZGU6_SOLTU	M0ZJD1_SOLTU	M0ZGU6	M0ZJD1	AAA_16 domain-containing protein.	Bifunctional dihydrofolate reductase-thymidylate synthase; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism; In the C-terminal section; belongs to the thymidylate synthase family.	0.720
M0ZGU6_SOLTU	M1CB83_SOLTU	M0ZGU6	M1CB83	AAA_16 domain-containing protein.	Uncharacterized protein.	0.542
M0ZGU6_SOLTU	M1CZM1_SOLTU	M0ZGU6	M1CZM1	AAA_16 domain-containing protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.679
M0ZJD1_SOLTU	M0ZGU6_SOLTU	M0ZJD1	M0ZGU6	Bifunctional dihydrofolate reductase-thymidylate synthase; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism; In the C-terminal section; belongs to the thymidylate synthase family.	AAA_16 domain-containing protein.	0.720
M0ZJD1_SOLTU	M1BX71_SOLTU	M0ZJD1	M1BX71	Bifunctional dihydrofolate reductase-thymidylate synthase; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism; In the C-terminal section; belongs to the thymidylate synthase family.	Uncharacterized protein.	0.532
M0ZJD1_SOLTU	M1CB83_SOLTU	M0ZJD1	M1CB83	Bifunctional dihydrofolate reductase-thymidylate synthase; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism; In the C-terminal section; belongs to the thymidylate synthase family.	Uncharacterized protein.	0.548
M0ZJD1_SOLTU	M1CZM1_SOLTU	M0ZJD1	M1CZM1	Bifunctional dihydrofolate reductase-thymidylate synthase; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism; In the C-terminal section; belongs to the thymidylate synthase family.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.981
M0ZJD1_SOLTU	M1D6F0_SOLTU	M0ZJD1	M1D6F0	Bifunctional dihydrofolate reductase-thymidylate synthase; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism; In the C-terminal section; belongs to the thymidylate synthase family.	Chorismate_bind domain-containing protein.	0.625
M0ZSJ5_SOLTU	M1CB83_SOLTU	M0ZSJ5	M1CB83	Nop domain-containing protein.	Uncharacterized protein.	0.461
M1BFI0_SOLTU	M1CB83_SOLTU	M1BFI0	M1CB83	Uncharacterized protein.	Uncharacterized protein.	0.451
M1BRD9_SOLTU	M1C3P0_SOLTU	M1BRD9	M1C3P0	Uncharacterized protein.	Aminotran_1_2 domain-containing protein.	0.547
M1BRD9_SOLTU	M1CB83_SOLTU	M1BRD9	M1CB83	Uncharacterized protein.	Uncharacterized protein.	0.549
M1BRD9_SOLTU	M1D6F0_SOLTU	M1BRD9	M1D6F0	Uncharacterized protein.	Chorismate_bind domain-containing protein.	0.529
M1BX71_SOLTU	M0ZJD1_SOLTU	M1BX71	M0ZJD1	Uncharacterized protein.	Bifunctional dihydrofolate reductase-thymidylate synthase; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism; In the C-terminal section; belongs to the thymidylate synthase family.	0.532
M1BX71_SOLTU	M1CB83_SOLTU	M1BX71	M1CB83	Uncharacterized protein.	Uncharacterized protein.	0.512
M1BX71_SOLTU	M1CZM1_SOLTU	M1BX71	M1CZM1	Uncharacterized protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.948
M1C3P0_SOLTU	M1BRD9_SOLTU	M1C3P0	M1BRD9	Aminotran_1_2 domain-containing protein.	Uncharacterized protein.	0.547
M1C3P0_SOLTU	M1CB83_SOLTU	M1C3P0	M1CB83	Aminotran_1_2 domain-containing protein.	Uncharacterized protein.	0.468
M1C3P0_SOLTU	M1CTJ1_SOLTU	M1C3P0	M1CTJ1	Aminotran_1_2 domain-containing protein.	Uncharacterized protein.	0.574
M1C3P0_SOLTU	M1D6F0_SOLTU	M1C3P0	M1D6F0	Aminotran_1_2 domain-containing protein.	Chorismate_bind domain-containing protein.	0.492