STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
M1CSX8_SOLTURab-GAP TBC domain-containing protein. (904 aa)    
Predicted Functional Partners:
M1BJI6_SOLTU
Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.
    
 
 0.932
M0ZW59_SOLTU
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.
   
 
 0.613
M1AM08_SOLTU
Uncharacterized protein.
   
 
 0.613
M1C203_SOLTU
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.
   
 
 0.613
M1CV53_SOLTU
Uncharacterized protein.
   
 
 0.613
M1CV55_SOLTU
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.
   
 
 0.613
M0ZN87_SOLTU
Uncharacterized protein.
   
 
 0.545
M1AAX8_SOLTU
Uncharacterized protein.
   
 
 0.545
M1BYY8_SOLTU
Uncharacterized protein.
   
 
 0.545
M1C3E5_SOLTU
Uncharacterized protein.
    
 
 0.506
Your Current Organism:
Solanum tuberosum
NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes
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