M1D124_SOLTU protein (Solanum tuberosum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

M1D124_SOLTU

RING-type domain-containing protein. (198 aa)

Predicted Functional Partners:

M1ALV7_SOLTU

0.676

M1C848_SOLTU

0.676

RBOHB

0.499

M1ASQ7_SOLTU

0.491

M0ZPI5_SOLTU

0.434

M1ASU9_SOLTU

0.417

Your Current Organism:

Solanum tuberosum

NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
M0ZPI5_SOLTU	M1D124_SOLTU	M0ZPI5	M1D124	RING-type domain-containing protein.	RING-type domain-containing protein.	0.434
M1ALV7_SOLTU	M1C848_SOLTU	M1ALV7	M1C848	Uncharacterized protein; Belongs to the peptidase C1 family.	Expansin; Causes loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. Belongs to the expansin family. Expansin A subfamily.	0.674
M1ALV7_SOLTU	M1D124_SOLTU	M1ALV7	M1D124	Uncharacterized protein; Belongs to the peptidase C1 family.	RING-type domain-containing protein.	0.676
M1ALV7_SOLTU	RBOHB	M1ALV7	Q948T9	Uncharacterized protein; Belongs to the peptidase C1 family.	Respiratory burst oxidase homolog protein B; Calcium-dependent NADPH oxidase that generates superoxide. Involved in the massive phase II oxidative burst induced by pathogen infection.	0.410
M1ASQ7_SOLTU	M1D124_SOLTU	M1ASQ7	M1D124	Uncharacterized protein.	RING-type domain-containing protein.	0.491
M1ASU9_SOLTU	M1D124_SOLTU	M1ASU9	M1D124	RING-type domain-containing protein.	RING-type domain-containing protein.	0.417
M1C848_SOLTU	M1ALV7_SOLTU	M1C848	M1ALV7	Expansin; Causes loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. Belongs to the expansin family. Expansin A subfamily.	Uncharacterized protein; Belongs to the peptidase C1 family.	0.674
M1C848_SOLTU	M1D124_SOLTU	M1C848	M1D124	Expansin; Causes loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. Belongs to the expansin family. Expansin A subfamily.	RING-type domain-containing protein.	0.676
M1C848_SOLTU	RBOHB	M1C848	Q948T9	Expansin; Causes loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. Belongs to the expansin family. Expansin A subfamily.	Respiratory burst oxidase homolog protein B; Calcium-dependent NADPH oxidase that generates superoxide. Involved in the massive phase II oxidative burst induced by pathogen infection.	0.517
M1D124_SOLTU	M0ZPI5_SOLTU	M1D124	M0ZPI5	RING-type domain-containing protein.	RING-type domain-containing protein.	0.434
M1D124_SOLTU	M1ALV7_SOLTU	M1D124	M1ALV7	RING-type domain-containing protein.	Uncharacterized protein; Belongs to the peptidase C1 family.	0.676
M1D124_SOLTU	M1ASQ7_SOLTU	M1D124	M1ASQ7	RING-type domain-containing protein.	Uncharacterized protein.	0.491
M1D124_SOLTU	M1ASU9_SOLTU	M1D124	M1ASU9	RING-type domain-containing protein.	RING-type domain-containing protein.	0.417
M1D124_SOLTU	M1C848_SOLTU	M1D124	M1C848	RING-type domain-containing protein.	Expansin; Causes loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. Belongs to the expansin family. Expansin A subfamily.	0.676
M1D124_SOLTU	RBOHB	M1D124	Q948T9	RING-type domain-containing protein.	Respiratory burst oxidase homolog protein B; Calcium-dependent NADPH oxidase that generates superoxide. Involved in the massive phase II oxidative burst induced by pathogen infection.	0.499
RBOHB	M1ALV7_SOLTU	Q948T9	M1ALV7	Respiratory burst oxidase homolog protein B; Calcium-dependent NADPH oxidase that generates superoxide. Involved in the massive phase II oxidative burst induced by pathogen infection.	Uncharacterized protein; Belongs to the peptidase C1 family.	0.410
RBOHB	M1C848_SOLTU	Q948T9	M1C848	Respiratory burst oxidase homolog protein B; Calcium-dependent NADPH oxidase that generates superoxide. Involved in the massive phase II oxidative burst induced by pathogen infection.	Expansin; Causes loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. Belongs to the expansin family. Expansin A subfamily.	0.517
RBOHB	M1D124_SOLTU	Q948T9	M1D124	Respiratory burst oxidase homolog protein B; Calcium-dependent NADPH oxidase that generates superoxide. Involved in the massive phase II oxidative burst induced by pathogen infection.	RING-type domain-containing protein.	0.499