STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
M1DPD9_SOLTUGlycosyltransferase family 92 protein; Belongs to the glycosyltransferase 92 family. (519 aa)    
Predicted Functional Partners:
M1A024_SOLTU
Ubiquitin-like domain-containing protein.
   
  0.493
O04829_SOLTU
Ubiquitin extension protein-like protein.
   
  0.493
UBI3
Ubiquitin-40S ribosomal protein S27a; Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-48-linked is involve [...]
   
  0.493
M1AVA9_SOLTU
Uncharacterized protein.
    
 0.483
M1AVB0_SOLTU
HECT domain-containing protein.
    
 0.483
M1AHZ4_SOLTU
E2_bind domain-containing protein.
    
 0.480
M1B3S3_SOLTU
SAP domain-containing protein.
     
 0.474
M1CKG0_SOLTU
PWWP domain-containing protein.
     
 0.463
M1A5A2_SOLTU
Ubiquitin-like domain-containing protein.
    
  0.439
M1AAX4_SOLTU
Uncharacterized protein.
    
  0.439
Your Current Organism:
Solanum tuberosum
NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes
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