STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
API-13Aspartic protease inhibitor 5; Inhibitor of cathepsin D (aspartic protease). May also inhibit trypsin and chymotrypsin (serine proteases). Protects the plant by inhibiting proteases of invading organisms; Belongs to the protease inhibitor I3 (leguminous Kunitz- type inhibitor) family. (220 aa)    
Predicted Functional Partners:
PATB2
Patatin-B2; Lipolytic acyl hydrolase (LAH), an activity which is thought to be involved in the response of tubers to pathogens. Can use p- nitrophenyl esters as substrats with highest activity on p-nitrophenyl caprate (C10). Also active on mono-acylglycolphosphocholines and diacylphospholipids, with highest specific activities observed were obtained with the synthetic phospholipids diC8PCho and diC9PCho. Mono- olein and myverol can also be hydrolyzed. Belongs to the patatin family.
      
 0.677
PAT0_SOLTU
Patatin; Probable lipolytic acyl hydrolase (LAH), an activity which is thought to be involved in the response of tubers to pathogens; Belongs to the patatin family.
      
 0.674
CPI2_SOLTU
Cysteine protease inhibitor 2; Inhibitor of subtilisin. Inhibits moderately trypsin and chymotrypsin (serine proteases). May protect the plant by inhibiting proteases of invading organisms; Belongs to the protease inhibitor I3 (leguminous Kunitz- type inhibitor) family.
      
 0.671
M1AAP2_SOLTU
Uncharacterized protein.
      
 0.670
CYN
Cyanate hydratase; Catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide; Belongs to the cyanase family.
   
  
 0.522
M1AW39_SOLTU
Dirigent protein; Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism.
      
 0.497
M1A9Z4_SOLTU
TRANSKETOLASE_1 domain-containing protein.
      
 0.441
TK
Transketolase, chloroplastic; Catalyzes the reversible transfer of a two-carbon ketol group from fructose-6-phosphate or sedoheptulose-7-phosphate to glyceraldehyde-3-phosphate to yield xylulose-5-phosphate and erythrose- 4-phosphate or ribose-5-phosphate, respectively.
      
 0.441
SHKB
Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic.
      
 0.410
Your Current Organism:
Solanum tuberosum
NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes
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