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PGSC0003DMT400030652 protein (Solanum tuberosum) - STRING interaction network
"PGSC0003DMT400030652" - DELLA protein RGA in Solanum tuberosum
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PGSC0003DMT400030652DELLA protein RGA; Belongs to the GRAS family (411 aa)    
Predicted Functional Partners:
PGSC0003DMT400055239
SHORT-ROOT protein; Belongs to the GRAS family (455 aa)
       
 
0.820
PGSC0003DMT400037884
Uncharacterized protein; GRAS family transcription factor; Belongs to the GRAS family (419 aa)
       
 
0.818
102587267
HDA6 (HISTONE DEACETYLASE 6); histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily (471 aa)
       
 
  0.782
102599257
Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5’-TGTCTC-3’ found in the auxin-responsive promoter elements (AuxREs) (676 aa)
       
 
  0.728
PGSC0003DMT400036577
Uncharacterized protein; Nodulation signaling pathway 1; Belongs to the GRAS family (130 aa)
           
  0.722
102586871
Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5’-TGTCTC-3’ found in the auxin-responsive promoter elements (AuxREs) (699 aa)
       
 
  0.713
102587577
Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5’-TGTCTC-3’ found in the auxin-responsive promoter elements (AuxREs) (650 aa)
       
 
  0.712
102587769
Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5’-TGTCTC-3’ found in the auxin-responsive promoter elements (AuxREs) (1097 aa)
       
 
  0.712
102594021
Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5’-TGTCTC-3’ found in the auxin-responsive promoter elements (AuxREs) (1157 aa)
       
 
  0.712
PGSC0003DMT400000345
Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5’-TGTCTC-3’ found in the auxin-responsive promoter elements (AuxREs) (685 aa)
       
 
  0.712
Your Current Organism:
Solanum tuberosum
NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes
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