STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR48170.1Hypothetical protein; KEGG: btk:BT9727_5121 2.7e-12 membrane protein; possible murein hydrolase exporter K05338; COG: COG1380 Putative effector of murein hydrolase LrgA; Psort location: CytoplasmicMembrane, score: 9.99. (137 aa)    
Predicted Functional Partners:
EDR48169.1
Hypothetical protein; KEGG: bcz:BCZK3376 8.5e-32 murein hydrolase export regulator K01238; COG: COG1346 Putative effector of murein hydrolase; Psort location: CytoplasmicMembrane, score: 9.99.
 
  
 0.995
EDR48168.1
Endopeptidase La family protein; KEGG: pol:Bpro_0925 4.5e-43 ATP-dependent protease La K01338; COG: COG0466 ATP-dependent Lon protease, bacterial type; Psort location: Cytoplasmic, score: 9.98.
       0.559
rho
Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.
  
  
 0.430
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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