STRINGSTRING
nifU protein (Pseudoflavonifractor capillosus) - STRING interaction network
"nifU" - Fe-S iron-sulfur cluster assembly protein, NifU family in Pseudoflavonifractor capillosus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nifUFe-S iron-sulfur cluster assembly protein, NifU family (146 aa)    
Predicted Functional Partners:
iscS
Cysteine desulfurase IscS ; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins (410 aa)
 
  0.999
BACCAP_02795
Aminotransferase, class V (378 aa)
 
  0.999
BACCAP_04766
Cysteine desulfurase family protein (390 aa)
   
  0.938
BACCAP_02456
Cysteine desulfurase family protein (379 aa)
   
  0.938
BACCAP_01948
Putative cysteine desulfurase family protein (381 aa)
   
  0.938
BACCAP_00684
ABC transporter, ATP-binding protein (245 aa)
   
 
  0.873
trmU
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (342 aa)
       
  0.850
BACCAP_00685
SufB/sufD domain protein (305 aa)
   
 
  0.814
BACCAP_03218
DnaK family protein (437 aa)
 
 
  0.802
BACCAP_02789
Heat shock protein 70 ; Acts as a chaperone (619 aa)
   
 
  0.769
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacillus capillosus, Bacteroides capillosus, Bacteroides capillosus ATCC 29799, P. capillosus, P. capillosus ATCC 29799, Pseudobacterium capillosum, Pseudoflavonifractor, Pseudoflavonifractor Carlier et al. 2010, Pseudoflavonifractor capillosus, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799, Ristella capillosa
Server load: low (14%) [HD]