STRINGSTRING
dam protein (Pseudoflavonifractor capillosus) - STRING interaction network
"dam" - Site-specific DNA-methyltransferase in Pseudoflavonifractor capillosus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
damSite-specific DNA-methyltransferase (adenine-specific) (280 aa)    
Predicted Functional Partners:
BACCAP_00124
Uncharacterized protein (421 aa)
 
          0.972
BACCAP_00121
Uncharacterized protein (146 aa)
              0.759
BACCAP_02659
Uncharacterized protein (311 aa)
 
     
  0.695
BACCAP_03034
Methyltransferase (342 aa)
 
     
  0.592
BACCAP_00122
Putative calcium-translocating P-type ATPase, PMCA-type (877 aa)
              0.592
BACCAP_01785
Methyltransferase (242 aa)
 
     
  0.554
nadE
NAD+ synthase (641 aa)
              0.544
BACCAP_03941
Methyltransferase (244 aa)
 
     
  0.542
BACCAP_04610
Methyltransferase (264 aa)
 
     
  0.518
BACCAP_04595
Methyltransferase (264 aa)
 
     
  0.516
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacillus capillosus, Bacteroides capillosus, Bacteroides capillosus ATCC 29799, P. capillosus, P. capillosus ATCC 29799, Pseudobacterium capillosum, Pseudoflavonifractor, Pseudoflavonifractor Carlier et al. 2010, Pseudoflavonifractor capillosus, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799, Ristella capillosa
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