STRINGSTRING
BACCAP_00127 protein (Pseudoflavonifractor capillosus) - STRING interaction network
"BACCAP_00127" - Sigma-70 region 2 in Pseudoflavonifractor capillosus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BACCAP_00127Sigma-70 region 2 (183 aa)    
Predicted Functional Partners:
BACCAP_00128
Uncharacterized protein (270 aa)
 
          0.951
BACCAP_00126
Thrombospondin type 3 repeat protein (173 aa)
              0.865
BACCAP_00130
Chromate transport protein (198 aa)
              0.692
BACCAP_00129
Chromate transport protein (183 aa)
              0.692
BACCAP_00746
Anti-sigma-V factor RsiV domain protein (287 aa)
 
 
 
  0.574
sigV
RNA polymerase sigma factor (185 aa)
 
          0.520
nadE
NAD+ synthase (641 aa)
         
  0.480
htrA
HtrA protein (447 aa)
   
   
  0.452
BACCAP_00629
Trypsin (425 aa)
   
   
  0.452
BACCAP_01228
Putative alkyl hydroperoxide reductase F subunit (540 aa)
         
  0.427
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacillus capillosus, Bacteroides capillosus, Bacteroides capillosus ATCC 29799, P. capillosus, P. capillosus ATCC 29799, Pseudobacterium capillosum, Pseudoflavonifractor, Pseudoflavonifractor Carlier et al. 2010, Pseudoflavonifractor capillosus, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799, Ristella capillosa
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