STRINGSTRING
BACCAP_00128 protein (Pseudoflavonifractor capillosus) - STRING interaction network
"BACCAP_00128" - Uncharacterized protein in Pseudoflavonifractor capillosus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BACCAP_00128Uncharacterized protein (270 aa)    
Predicted Functional Partners:
BACCAP_00127
Sigma-70 region 2 (183 aa)
 
          0.951
BACCAP_00126
Thrombospondin type 3 repeat protein (173 aa)
              0.866
BACCAP_00130
Chromate transport protein (198 aa)
              0.692
BACCAP_00129
Chromate transport protein (183 aa)
              0.692
BACCAP_01301
Oxidoreductase, short chain dehydrogenase/reductase family protein (260 aa)
   
          0.517
BACCAP_03038
Uncharacterized protein (162 aa)
   
          0.503
BACCAP_04473
No annotation available (103 aa)
   
          0.492
BACCAP_03833
Uncharacterized protein (103 aa)
   
          0.492
BACCAP_01304
Uncharacterized protein (155 aa)
 
          0.467
nadE
NAD+ synthase (641 aa)
              0.464
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacillus capillosus, Bacteroides capillosus, Bacteroides capillosus ATCC 29799, P. capillosus, P. capillosus ATCC 29799, Pseudobacterium capillosum, Pseudoflavonifractor, Pseudoflavonifractor Carlier et al. 2010, Pseudoflavonifractor capillosus, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799, Ristella capillosa
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