STRINGSTRING
BACCAP_00140 protein (Pseudoflavonifractor capillosus) - STRING interaction network
"BACCAP_00140" - DNA-binding helix-turn-helix protein in Pseudoflavonifractor capillosus
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BACCAP_00140DNA-binding helix-turn-helix protein (253 aa)    
Predicted Functional Partners:
BACCAP_02432
DNA-binding helix-turn-helix protein (210 aa)
   
          0.767
BACCAP_02820
DNA-binding helix-turn-helix protein (307 aa)
   
          0.765
BACCAP_03683
DNA-binding helix-turn-helix protein (171 aa)
   
          0.760
BACCAP_00662
DNA-binding helix-turn-helix protein (307 aa)
   
          0.758
BACCAP_04557
DNA-binding helix-turn-helix protein (157 aa)
   
          0.721
BACCAP_00776
DNA-binding helix-turn-helix protein (360 aa)
 
          0.718
BACCAP_01431
DNA-binding helix-turn-helix protein (417 aa)
   
          0.699
BACCAP_00139
FCD domain protein (229 aa)
              0.614
ilvD
Dihydroxy-acid dehydratase (570 aa)
              0.477
BACCAP_04810
DNA-binding helix-turn-helix protein (89 aa)
   
          0.403
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacillus capillosus, Bacteroides capillosus, Bacteroides capillosus ATCC 29799, P. capillosus, P. capillosus ATCC 29799, Pseudobacterium capillosum, Pseudoflavonifractor, Pseudoflavonifractor Carlier et al. 2010, Pseudoflavonifractor capillosus, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799, Ristella capillosa
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