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rnfD protein (Pseudoflavonifractor capillosus) - STRING interaction network
"rnfD" - Electron transport complex, RnfABCDGE type, D subunit in Pseudoflavonifractor capillosus
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnfDElectron transport complex, RnfABCDGE type, D subunit (414 aa)    
Predicted Functional Partners:
rnfC
Electron transport complex subunit C ; Part of a membrane complex involved in electron transport (437 aa)
   
  0.989
rnfG
Electron transport complex subunit G ; Part of a membrane complex involved in electron transport (196 aa)
          0.972
BACCAP_00150
Uncharacterized protein (193 aa)
 
          0.967
BACCAP_00149
Rnf-Nqr subunit, membrane protein (240 aa)
 
          0.967
nqrD
Electron transport complex subunit E ; Part of a membrane complex involved in electron transport (225 aa)
 
   
  0.952
BACCAP_01363
Putative ferredoxin (266 aa)
 
   
  0.937
BACCAP_01368
Electron transport complex subunit C ; Part of a membrane complex involved in electron transport (454 aa)
   
  0.935
BACCAP_01364
Electron transport complex subunit A ; Part of a membrane complex involved in electron transport (201 aa)
 
   
  0.928
BACCAP_01366
Uncharacterized protein (462 aa)
 
   
  0.902
BACCAP_01551
Respiratory-chain NADH dehydrogenase 51 Kd subunit (452 aa)
   
  0.848
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacillus capillosus, Bacteroides capillosus, Bacteroides capillosus ATCC 29799, P. capillosus, P. capillosus ATCC 29799, Pseudobacterium capillosum, Pseudoflavonifractor, Pseudoflavonifractor Carlier et al. 2010, Pseudoflavonifractor capillosus, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799, Ristella capillosa
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