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rpe protein (Pseudoflavonifractor capillosus) - STRING interaction network
"rpe" - Ribulose-phosphate 3-epimerase in Pseudoflavonifractor capillosus
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpeRibulose-phosphate 3-epimerase (218 aa)    
Predicted Functional Partners:
BACCAP_04824
Transketolase, thiamine diphosphate binding domain protein (304 aa)
   
  0.989
BACCAP_04823
Transketolase, pyridine binding domain protein (316 aa)
 
   
  0.919
rpiB
Ribose-5-phosphate isomerase B (144 aa)
 
   
  0.915
pgk
Phosphoglycerate kinase (423 aa)
 
 
  0.866
xylB
Xylulokinase (508 aa)
   
  0.858
rsgA
Ribosome small subunit-dependent GTPase A ; May play a role in 30S ribosomal subunit biogenesis. Unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover (299 aa)
       
  0.856
nifJ
Pyruvate-flavodoxin oxidoreductase ; Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin (1180 aa)
   
 
  0.845
BACCAP_04714
Kinase, PfkB family (341 aa)
   
  0.836
BACCAP_03741
Kinase, PfkB family (365 aa)
   
  0.836
BACCAP_03740
Kinase, PfkB family (341 aa)
   
  0.836
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacillus capillosus, Bacteroides capillosus, Bacteroides capillosus ATCC 29799, P. capillosus, P. capillosus ATCC 29799, Pseudobacterium capillosum, Pseudoflavonifractor, Pseudoflavonifractor Carlier et al. 2010, Pseudoflavonifractor capillosus, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799, Ristella capillosa
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