STRINGSTRING
BACCAP_00186 protein (Pseudoflavonifractor capillosus) - STRING interaction network
"BACCAP_00186" - Polysaccharide biosynthesis protein in Pseudoflavonifractor capillosus
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BACCAP_00186Polysaccharide biosynthesis protein (654 aa)    
Predicted Functional Partners:
BACCAP_00189
Bacterial sugar transferase (228 aa)
 
   
  0.940
BACCAP_00188
Glycosyltransferase, group 1 family protein (363 aa)
 
   
  0.891
galU
UDP-glucose pyrophosphorylase (289 aa)
       
  0.869
BACCAP_00180
Chain length determinant protein (493 aa)
 
   
  0.869
BACCAP_00183
PHP domain protein (253 aa)
 
   
  0.868
BACCAP_00181
Chain length determinant protein (495 aa)
 
   
  0.862
BACCAP_01062
UDP-glucose 4-epimerase (339 aa)
       
0.858
BACCAP_04690
UDP-glucose 4-epimerase (329 aa)
       
0.858
BACCAP_04022
UDP-N-acetylglucosamine 2-epimerase (385 aa)
   
 
  0.853
BACCAP_00184
Uncharacterized protein (259 aa)
              0.805
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacillus capillosus, Bacteroides capillosus, Bacteroides capillosus ATCC 29799, P. capillosus, P. capillosus ATCC 29799, Pseudobacterium capillosum, Pseudoflavonifractor, Pseudoflavonifractor Carlier et al. 2010, Pseudoflavonifractor capillosus, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799, Ristella capillosa
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