STRINGSTRING
BACCAP_00187 protein (Pseudoflavonifractor capillosus) - STRING interaction network
"BACCAP_00187" - Uncharacterized protein in Pseudoflavonifractor capillosus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BACCAP_00187Uncharacterized protein (371 aa)    
Predicted Functional Partners:
BACCAP_00191
Uncharacterized protein (413 aa)
 
          0.945
BACCAP_00195
Uncharacterized protein (281 aa)
 
          0.912
BACCAP_00190
Uncharacterized protein (157 aa)
 
          0.903
BACCAP_00188
Glycosyltransferase, group 1 family protein (363 aa)
 
          0.899
BACCAP_00189
Bacterial sugar transferase (228 aa)
 
          0.893
BACCAP_00194
Radical SAM domain protein (376 aa)
 
          0.835
BACCAP_00193
Uncharacterized protein (86 aa)
 
          0.831
BACCAP_00192
Ser/Thr phosphatase family protein (288 aa)
 
          0.797
BACCAP_00186
Polysaccharide biosynthesis protein (654 aa)
 
          0.673
BACCAP_00200
ABC transporter, ATP-binding protein (595 aa)
   
          0.634
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacillus capillosus, Bacteroides capillosus, Bacteroides capillosus ATCC 29799, P. capillosus, P. capillosus ATCC 29799, Pseudobacterium capillosum, Pseudoflavonifractor, Pseudoflavonifractor Carlier et al. 2010, Pseudoflavonifractor capillosus, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799, Ristella capillosa
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