STRINGSTRING
BACCAP_00227 protein (Pseudoflavonifractor capillosus) - STRING interaction network
"BACCAP_00227" - Uncharacterized protein in Pseudoflavonifractor capillosus
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BACCAP_00227Uncharacterized protein (163 aa)    
Predicted Functional Partners:
BACCAP_00226
Uncharacterized protein (285 aa)
              0.860
BACCAP_00225
LytTr DNA-binding domain protein (162 aa)
              0.817
BACCAP_00228
Uncharacterized protein (129 aa)
              0.767
BACCAP_00224
HTH domain protein (359 aa)
              0.589
asnS
Asparaginyl-tRNA synthetase (475 aa)
              0.538
psuG
Pseudouridine-5’-phosphate glycosidase ; Catalyzes the reversible cleavage of pseudouridine 5’- phosphate (PsiMP) to ribose 5-phosphate and uracil. Functions biologically in the cleavage direction, as part of a pseudouridine degradation pathway (307 aa)
              0.444
BACCAP_00231
Uncharacterized protein (46 aa)
              0.407
BACCAP_00230
Uncharacterized protein (84 aa)
              0.407
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacillus capillosus, Bacteroides capillosus, Bacteroides capillosus ATCC 29799, P. capillosus, P. capillosus ATCC 29799, Pseudobacterium capillosum, Pseudoflavonifractor, Pseudoflavonifractor Carlier et al. 2010, Pseudoflavonifractor capillosus, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799, Ristella capillosa
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