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STRINGSTRING
EDN01898.1 protein (Pseudoflavonifractor capillosus) - STRING interaction network
"EDN01898.1" - KEGG: afu:AF1021 2.0e-30 ABC transporter, ATP-binding protein K02017 in Pseudoflavonifractor capillosus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDN01898.1KEGG- afu-AF1021 2.0e-30 ABC transporter, ATP-binding protein K02017; COG- COG1131 ABC-type multidrug transport system, ATPase component; Psort location- Cytoplasmic, score-9.12 (292 aa)    
Predicted Functional Partners:
EDN01899.1
KEGG- bcz-BCZK3833 1.1e-13 transcriptional regulator, GntR family; COG- COG1725 Predicted transcriptional regulators; Psort location- Cytoplasmic, score-8.96 (124 aa)
 
     
  0.971
EDN01897.1
Uncharacterized protein; COG- NOG16845 non supervised orthologous group; Psort location- CytoplasmicMembrane, score-10.00 (213 aa)
 
          0.943
EDN01896.1
annotation not available (44 aa)
              0.622
EDN01900.1
Sigma-70, region 4; KEGG- reh-H16_B0256 0.0064 fliA; DNA-directed RNA polymerase sigma subunit / flagellum specific K00960; Psort location- Cytoplasmic, score-8.96 (92 aa)
              0.512
EDN01901.1
Uncharacterized protein; Psort location- Cytoplasmic, score-8.96 (101 aa)
              0.471
EDN01902.1
annotation not available (166 aa)
              0.440
EDN01671.1
KEGG- bcz-BCZK3833 2.3e-15 transcriptional regulator, GntR family; COG- COG1725 Predicted transcriptional regulators (130 aa)
     
  0.433
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacteroides capillosus ATCC 29799, P. capillosus ATCC 29799, Pseudoflavonifractor capillosus, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus ATCC29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799
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