STRINGSTRING
BACCAP_00280 protein (Pseudoflavonifractor capillosus) - STRING interaction network
"BACCAP_00280" - Toxin secretion/phage lysis holin in Pseudoflavonifractor capillosus
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BACCAP_00280Toxin secretion/phage lysis holin (148 aa)    
Predicted Functional Partners:
BACCAP_00281
Uncharacterized protein (152 aa)
              0.859
BACCAP_00283
Baseplate J-like protein (352 aa)
              0.796
BACCAP_00282
Uncharacterized protein (188 aa)
              0.796
BACCAP_00285
Uncharacterized protein (109 aa)
              0.794
BACCAP_00284
Uncharacterized protein (117 aa)
              0.794
BACCAP_00698
N-acetylmuramoyl-L-alanine amidase (262 aa)
 
     
  0.624
BACCAP_03825
Resolvase, N-terminal domain protein (513 aa)
 
          0.617
BACCAP_00291
Uncharacterized protein (129 aa)
              0.617
BACCAP_00290
Uncharacterized protein (143 aa)
              0.617
BACCAP_00289
Uncharacterized protein (69 aa)
              0.617
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacillus capillosus, Bacteroides capillosus, Bacteroides capillosus ATCC 29799, P. capillosus, P. capillosus ATCC 29799, Pseudobacterium capillosum, Pseudoflavonifractor, Pseudoflavonifractor Carlier et al. 2010, Pseudoflavonifractor capillosus, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799, Ristella capillosa
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