STRINGSTRING
BACCAP_00323 protein (Pseudoflavonifractor capillosus) - STRING interaction network
"BACCAP_00323" - Uncharacterized protein in Pseudoflavonifractor capillosus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BACCAP_00323Uncharacterized protein (248 aa)    
Predicted Functional Partners:
BACCAP_00322
Uncharacterized protein (503 aa)
              0.633
BACCAP_00320
Germination protein, Ger(X)C family (365 aa)
              0.596
BACCAP_00319
Spore germination protein (Amino acid permease) (355 aa)
 
          0.581
BACCAP_00318
Uncharacterized protein (34 aa)
              0.468
BACCAP_00904
Uncharacterized protein (569 aa)
   
          0.466
yqeG
HAD phosphatase, family IIIA (183 aa)
 
          0.435
BACCAP_04071
Putative pre-16S rRNA nuclease ; Could be a nuclease involved in processing of the 5’-end of pre-16S rRNA (139 aa)
              0.404
BACCAP_00412
Acyl-CoA thioester hydrolase, YbgC/YbaW family (150 aa)
              0.404
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacillus capillosus, Bacteroides capillosus, Bacteroides capillosus ATCC 29799, P. capillosus, P. capillosus ATCC 29799, Pseudobacterium capillosum, Pseudoflavonifractor, Pseudoflavonifractor Carlier et al. 2010, Pseudoflavonifractor capillosus, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799, Ristella capillosa
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