STRINGSTRING
BACCAP_00333 protein (Pseudoflavonifractor capillosus) - STRING interaction network
"BACCAP_00333" - HD domain protein in Pseudoflavonifractor capillosus
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BACCAP_00333HD domain protein (184 aa)    
Predicted Functional Partners:
BACCAP_04177
Uncharacterized protein (342 aa)
          0.696
cinA
Putative competence-damage inducible protein (420 aa)
         
  0.669
BACCAP_00334
Uncharacterized protein (66 aa)
              0.657
rnpA
Protein C5 ; RNaseP catalyzes the removal of the 5’-leader sequence from pre-tRNA to produce the mature 5’-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5’-leader sequence and broadening the substrate specificity of the ribozyme (115 aa)
         
  0.648
BACCAP_03251
Uncharacterized protein (294 aa)
          0.577
BACCAP_01663
DHHA1 domain protein (315 aa)
       
  0.516
BACCAP_04565
HDIG domain protein (438 aa)
       
  0.504
cca
tRNA adenylyltransferase (392 aa)
       
  0.504
BACCAP_00111
Uncharacterized protein (377 aa)
 
          0.481
metG
Methionine--tRNA ligase (656 aa)
         
  0.468
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacillus capillosus, Bacteroides capillosus, Bacteroides capillosus ATCC 29799, P. capillosus, P. capillosus ATCC 29799, Pseudobacterium capillosum, Pseudoflavonifractor, Pseudoflavonifractor Carlier et al. 2010, Pseudoflavonifractor capillosus, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799, Ristella capillosa
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