STRINGSTRING
BACCAP_00336 protein (Pseudoflavonifractor capillosus) - STRING interaction network
"BACCAP_00336" - Transcriptional regulator, GntR family in Pseudoflavonifractor capillosus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BACCAP_00336Transcriptional regulator, GntR family (130 aa)    
Predicted Functional Partners:
BACCAP_00337
ABC transporter, ATP-binding protein (300 aa)
 
     
  0.957
BACCAP_00338
Uncharacterized protein (677 aa)
 
          0.952
BACCAP_00240
ABC transporter, ATP-binding protein (292 aa)
 
     
  0.582
BACCAP_00334
Uncharacterized protein (66 aa)
              0.504
BACCAP_04340
Uncharacterized protein (156 aa)
         
  0.423
BACCAP_03866
ABC transporter, ATP-binding protein (307 aa)
         
  0.423
BACCAP_03649
ABC transporter, ATP-binding protein (274 aa)
         
  0.423
BACCAP_03289
ABC transporter, ATP-binding protein (235 aa)
         
  0.423
BACCAP_02852
Uncharacterized protein (146 aa)
         
  0.423
BACCAP_01701
ABC transporter, ATP-binding protein (341 aa)
         
  0.423
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacillus capillosus, Bacteroides capillosus, Bacteroides capillosus ATCC 29799, P. capillosus, P. capillosus ATCC 29799, Pseudobacterium capillosum, Pseudoflavonifractor, Pseudoflavonifractor Carlier et al. 2010, Pseudoflavonifractor capillosus, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799, Ristella capillosa
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