STRINGSTRING
BACCAP_00338 protein (Pseudoflavonifractor capillosus) - STRING interaction network
"BACCAP_00338" - Uncharacterized protein in Pseudoflavonifractor capillosus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BACCAP_00338Uncharacterized protein (677 aa)    
Predicted Functional Partners:
BACCAP_00337
ABC transporter, ATP-binding protein (300 aa)
 
          0.972
BACCAP_00336
Transcriptional regulator, GntR family (130 aa)
 
          0.952
BACCAP_04067
Peptidylprolyl isomerase (529 aa)
   
          0.652
BACCAP_02531
Uncharacterized protein (803 aa)
   
          0.628
BACCAP_03923
Sortase family protein (244 aa)
   
          0.599
BACCAP_01804
NlpC/P60 family protein (696 aa)
   
          0.589
BACCAP_03804
Uncharacterized protein (702 aa)
   
          0.538
BACCAP_00334
Uncharacterized protein (66 aa)
              0.504
BACCAP_01762
Sortase family protein (243 aa)
   
          0.481
BACCAP_03310
Sortase family protein (254 aa)
   
          0.473
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacillus capillosus, Bacteroides capillosus, Bacteroides capillosus ATCC 29799, P. capillosus, P. capillosus ATCC 29799, Pseudobacterium capillosum, Pseudoflavonifractor, Pseudoflavonifractor Carlier et al. 2010, Pseudoflavonifractor capillosus, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799, Ristella capillosa
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