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hydA protein (Pseudoflavonifractor capillosus) - STRING interaction network
"hydA" - Dihydropyrimidinase in Pseudoflavonifractor capillosus
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hydADihydropyrimidinase (472 aa)    
Predicted Functional Partners:
pyrB
Aspartate transcarbamylase (354 aa)
 
  0.994
carB
Carbamoyl-phosphate synthetase ammonia chain (1098 aa)
 
  0.986
pyrD
Dihydroorotate dehydrogenase ; Catalyzes the conversion of dihydroorotate to orotate (340 aa)
  0.984
carA
Carbamoyl-phosphate synthetase glutamine chain (363 aa)
 
  0.966
ygeW
Putative carbamoyltransferase YgeW (412 aa)
 
  0.951
BACCAP_01358
Aspartate/ornithine carbamoyltransferase family protein (399 aa)
 
  0.950
BACCAP_01427
Putative selenate reductase, YgfK subunit (998 aa)
 
  0.941
BACCAP_00721
Phosphoribosylformylglycinamidine synthase (1235 aa)
   
   
  0.911
BACCAP_01357
Putative peptidase (463 aa)
 
   
  0.909
BACCAP_00900
Glutamate synthase [NADPH], large subunit (1551 aa)
   
 
  0.905
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacillus capillosus, Bacteroides capillosus, Bacteroides capillosus ATCC 29799, P. capillosus, P. capillosus ATCC 29799, Pseudobacterium capillosum, Pseudoflavonifractor, Pseudoflavonifractor Carlier et al. 2010, Pseudoflavonifractor capillosus, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799, Ristella capillosa
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