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BACCAP_00401 protein (Pseudoflavonifractor capillosus) - STRING interaction network
"BACCAP_00401" - R3H domain protein in Pseudoflavonifractor capillosus
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BACCAP_00401R3H domain protein (265 aa)    
Predicted Functional Partners:
BACCAP_00402
Membrane protein insertase, YidC/Oxa1 family (474 aa)
 
   
  0.854
BACCAP_02089
UPF0109 protein BACCAP_02089 (80 aa)
   
      0.848
rnpA
Protein C5 ; RNaseP catalyzes the removal of the 5’-leader sequence from pre-tRNA to produce the mature 5’-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5’-leader sequence and broadening the substrate specificity of the ribozyme (115 aa)
   
   
  0.733
BACCAP_00403
Putative membrane protein insertion efficiency factor ; Could be involved in insertion of integral membrane proteins into the membrane (72 aa)
   
        0.722
mnmE
tRNA modification GTPase MnmE ; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34 (458 aa)
 
     
  0.560
gidA
Glucose-inhibited division protein A ; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34 (621 aa)
 
     
  0.547
BACCAP_00400
Uncharacterized protein (256 aa)
              0.514
BACCAP_04423
UDP-N-acetylmuramyl-tripeptide synthetase (486 aa)
     
      0.496
BACCAP_00659
UDP-N-acetylmuramyl-tripeptide synthetase (507 aa)
     
      0.496
BACCAP_02117
Putative ACR, COG1399 (167 aa)
 
          0.472
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacillus capillosus, Bacteroides capillosus, Bacteroides capillosus ATCC 29799, P. capillosus, P. capillosus ATCC 29799, Pseudobacterium capillosum, Pseudoflavonifractor, Pseudoflavonifractor Carlier et al. 2010, Pseudoflavonifractor capillosus, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799, Ristella capillosa
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