• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
EDN01744.1 protein (Pseudoflavonifractor capillosus) - STRING interaction network
"EDN01744.1" - annotation not available in Pseudoflavonifractor capillosus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDN01744.1annotation not available (39 aa)    
Predicted Functional Partners:
EDN01745.1
annotation not available (56 aa)
              0.625
dnaN
Beta sliding clamp; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3’-5’ exonuclease proofreading activity. The beta chain is required for initiation of replication as [...] (370 aa)
              0.500
recF
DNA replication and repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP (367 aa)
              0.491
EDN01748.1
S4 domain protein; KEGG- cdi-DIP1195 0.00067 putative pseudouridine synthase B K06178; COG- COG2501 Uncharacterized conserved protein; Psort location- Cytoplasmic, score-8.96 (70 aa)
              0.491
EDN01747.1
Acyl-CoA thioester hydrolase, YbgC/YbaW family; KEGG- btl-BALH_3247 1.6e-14 possible 4-hydroxybenzoyl-CoA thioesterase K01075; COG- COG0824 Predicted thioesterase; Psort location- Cytoplasmic, score-8.96 (150 aa)
              0.491
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacteroides capillosus ATCC 29799, P. capillosus ATCC 29799, Pseudoflavonifractor capillosus, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus ATCC29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799
Server load: low (7%) [HD]