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dnaN protein (Pseudoflavonifractor capillosus) - STRING interaction network
"dnaN" - DNA polymerase III subunit beta in Pseudoflavonifractor capillosus
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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dnaNDNA polymerase III subunit beta ; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3’ to 5’ exonuclease activity. The beta chain is required for initiation of replication once it is clamped onto DNA, it slides freely (bidirectional and ATP- independent) along duplex DNA (370 aa)    
Predicted Functional Partners:
polA
DNA polymerase (889 aa)
   
  0.998
BACCAP_03522
DNA-directed DNA polymerase (1161 aa)
   
  0.996
BACCAP_00398
Putative DNA polymerase III, delta’ subunit (331 aa)
   
  0.993
BACCAP_03200
DNA polymerase III subunit gamma and tau family protein (381 aa)
   
  0.991
BACCAP_02783
Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent (784 aa)
     
 
  0.987
holA
DNA polymerase III, delta subunit (347 aa)
 
  0.986
dnaX
DNA polymerase III, subunit gamma and tau (596 aa)
 
  0.985
recF
DNA replication and repair protein RecF ; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP (367 aa)
 
   
  0.980
BACCAP_01159
Exonuclease, DNA polymerase III, epsilon subunit family (191 aa)
 
 
  0.980
dnaA
Chromosomal replication initiator protein DnaA ; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box)- 5’-TTATC[CA]A[CA]A-3’. DnaA binds to ATP and to acidic phospholipids (426 aa)
 
 
  0.979
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacillus capillosus, Bacteroides capillosus, Bacteroides capillosus ATCC 29799, P. capillosus, P. capillosus ATCC 29799, Pseudobacterium capillosum, Pseudoflavonifractor, Pseudoflavonifractor Carlier et al. 2010, Pseudoflavonifractor capillosus, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799, Ristella capillosa
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