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EDN01761.1 protein (Pseudoflavonifractor capillosus) - STRING interaction network
"EDN01761.1" - Ribonuclease H in Pseudoflavonifractor capillosus
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Known Interactions
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Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
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Score
EDN01761.1Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA- DNA hybrids (146 aa)    
Predicted Functional Partners:
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5’-3’ exonuclease activity (889 aa)
 
  0.963
dnaX
DNA polymerase III subunit gamma/tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3’ to 5’ exonuclease activity (596 aa)
 
 
    0.824
deoC
Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily (238 aa)
     
    0.805
rnpA
Ribonuclease P protein component; RNaseP catalyzes the removal of the 5’-leader sequence from pre-tRNA to produce the mature 5’-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5’-leader sequence and broadening the substrate specificity of the ribozyme (115 aa)
       
  0.753
hemL
KEGG- ecc-c0189 1.6e-133 hemL; glutamate-1-semialdehyde aminotransferase K01845; COG- COG0001 Glutamate-1-semialdehyde aminotransferase; Psort location- Cytoplasmic, score-8.96 (427 aa)
            0.736
EDN01760.1
annotation not available (128 aa)
              0.713
EDM98720.1
KEGG- tte-TTE1818 0. dnaE; DNA polymerase III alpha subunit K02337; COG- COG0587 DNA polymerase III, alpha subunit; Psort location- Cytoplasmic, score-9.97 (1161 aa)
     
 
  0.707
EDN00937.1
KEGG- cpe-CPE1401 2.5e-32 probable DNA polymerase III epsilon chain K02342; COG- COG0847 DNA polymerase III, epsilon subunit and related 3-5 exonucleases; Psort location- Cytoplasmic, score-8.96 (191 aa)
   
 
  0.692
dnaN
Beta sliding clamp; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3’-5’ exonuclease proofreading activity. The beta chain is required for initiation of replication as [...] (370 aa)
   
 
  0.684
cobS
Adenosylcobinamide-GDP ribazoletransferase; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5’-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5’-phosphate; Belongs to the CobS family (256 aa)
     
 
  0.669
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacteroides capillosus ATCC 29799, P. capillosus ATCC 29799, Pseudoflavonifractor capillosus, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus ATCC29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799
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