STRINGSTRING
BACCAP_00433 protein (Pseudoflavonifractor capillosus) - STRING interaction network
"BACCAP_00433" - Uncharacterized protein in Pseudoflavonifractor capillosus
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BACCAP_00433Uncharacterized protein (42 aa)    
Predicted Functional Partners:
gpr
Spore protease ; Initiates the rapid degradation of small, acid-soluble proteins during spore germination (300 aa)
              0.665
rpsT
30S ribosomal protein S20 ; Binds directly to 16S ribosomal RNA (90 aa)
              0.543
BACCAP_00430
Uncharacterized protein (45 aa)
              0.508
BACCAP_00429
YihY family protein (295 aa)
              0.508
BACCAP_00435
Uncharacterized protein (186 aa)
              0.442
BACCAP_00434
Uncharacterized protein (254 aa)
              0.442
BACCAP_00436
Shikimate kinase ; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate (170 aa)
              0.424
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacillus capillosus, Bacteroides capillosus, Bacteroides capillosus ATCC 29799, P. capillosus, P. capillosus ATCC 29799, Pseudobacterium capillosum, Pseudoflavonifractor, Pseudoflavonifractor Carlier et al. 2010, Pseudoflavonifractor capillosus, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799, Ristella capillosa
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