STRINGSTRING
BACCAP_00441 protein (Pseudoflavonifractor capillosus) - STRING interaction network
"BACCAP_00441" - DNA-binding helix-turn-helix protein in Pseudoflavonifractor capillosus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BACCAP_00441DNA-binding helix-turn-helix protein (240 aa)    
Predicted Functional Partners:
BACCAP_03485
Uncharacterized protein (96 aa)
   
          0.765
BACCAP_04460
DNA-binding helix-turn-helix protein (103 aa)
   
          0.700
BACCAP_00854
DNA-binding helix-turn-helix protein (72 aa)
   
          0.684
BACCAP_01328
Uncharacterized protein (418 aa)
 
          0.663
BACCAP_00574
DNA-binding helix-turn-helix protein (74 aa)
   
          0.655
BACCAP_02421
Uncharacterized protein (452 aa)
   
          0.650
BACCAP_02741
Uncharacterized protein (130 aa)
   
          0.636
BACCAP_01048
DNA-binding helix-turn-helix protein (82 aa)
   
          0.597
BACCAP_01915
Putative N-acetylmuramoyl-L-alanine amidase (255 aa)
   
          0.595
pta
Phosphate acetyltransferase (329 aa)
              0.572
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacillus capillosus, Bacteroides capillosus, Bacteroides capillosus ATCC 29799, P. capillosus, P. capillosus ATCC 29799, Pseudobacterium capillosum, Pseudoflavonifractor, Pseudoflavonifractor Carlier et al. 2010, Pseudoflavonifractor capillosus, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799, Ristella capillosa
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