STRINGSTRING
BACCAP_00467 protein (Pseudoflavonifractor capillosus) - STRING interaction network
"BACCAP_00467" - MATE efflux family protein in Pseudoflavonifractor capillosus
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BACCAP_00467MATE efflux family protein (459 aa)    
Predicted Functional Partners:
BACCAP_00466
Uncharacterized protein (205 aa)
              0.859
BACCAP_00464
Uncharacterized protein (44 aa)
              0.627
BACCAP_01941
Acyltransferase (205 aa)
     
  0.574
BACCAP_00468
Uncharacterized protein (183 aa)
              0.544
BACCAP_02389
Single-stranded DNA-binding protein (161 aa)
       
  0.504
BACCAP_00024
Single-strand binding family protein (244 aa)
       
  0.504
BACCAP_00465
Radical SAM domain protein (473 aa)
              0.499
BACCAP_03914
Uncharacterized protein (815 aa)
       
    0.498
BACCAP_03645
Transcriptional regulator, MarR family (151 aa)
 
     
  0.484
BACCAP_02335
PhoH family protein (322 aa)
     
 
  0.447
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacillus capillosus, Bacteroides capillosus, Bacteroides capillosus ATCC 29799, P. capillosus, P. capillosus ATCC 29799, Pseudobacterium capillosum, Pseudoflavonifractor, Pseudoflavonifractor Carlier et al. 2010, Pseudoflavonifractor capillosus, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799, Ristella capillosa
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