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pepD protein (Pseudoflavonifractor capillosus) - STRING interaction network
"pepD" - Xaa-His dipeptidase in Pseudoflavonifractor capillosus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pepDXaa-His dipeptidase (490 aa)    
Predicted Functional Partners:
cysK
Cysteine synthase A (311 aa)
   
 
  0.783
glyA
Serine hydroxymethyltransferase ; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism (413 aa)
   
 
  0.775
BACCAP_03608
Aminotransferase, class I/II (397 aa)
       
  0.766
BACCAP_01993
Aminotransferase, class I/II (380 aa)
       
  0.766
BACCAP_01509
Aminotransferase, class I/II (390 aa)
       
    0.764
BACCAP_01379
Hemolysin (403 aa)
       
    0.764
argD
Acetylornithine aminotransferase (394 aa)
       
  0.714
BACCAP_00344
Pyridoxal-phosphate dependent protein (489 aa)
   
 
  0.663
BACCAP_01357
Putative peptidase (463 aa)
       
  0.656
BACCAP_00043
Dipeptidase PepV (472 aa)
       
  0.656
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacillus capillosus, Bacteroides capillosus, Bacteroides capillosus ATCC 29799, P. capillosus, P. capillosus ATCC 29799, Pseudobacterium capillosum, Pseudoflavonifractor, Pseudoflavonifractor Carlier et al. 2010, Pseudoflavonifractor capillosus, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799, Ristella capillosa
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