STRINGSTRING
yabP protein (Pseudoflavonifractor capillosus) - STRING interaction network
"yabP" - Sporulation protein YabP in Pseudoflavonifractor capillosus
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yabPSporulation protein YabP (95 aa)    
Predicted Functional Partners:
BACCAP_01101
Putative stage II sporulation protein E (787 aa)
 
          0.852
BACCAP_01686
Putative stage V sporulation protein T (180 aa)
 
          0.851
spoIVA
Stage IV sporulation protein A (518 aa)
   
     
  0.786
spoIVB
SpoIVB peptidase (371 aa)
 
          0.781
spoVAC
Stage V sporulation protein AC (147 aa)
   
          0.777
BACCAP_04015
RNA polymerase sigma factor ; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released (256 aa)
   
          0.775
gpr
Spore protease ; Initiates the rapid degradation of small, acid-soluble proteins during spore germination (300 aa)
   
          0.775
spoVAD
Stage V sporulation protein AD (341 aa)
   
          0.774
spoVAE
Stage V sporulation protein AE (122 aa)
   
          0.774
sigE
RNA polymerase sigma factor ; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released (240 aa)
   
          0.774
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacillus capillosus, Bacteroides capillosus, Bacteroides capillosus ATCC 29799, P. capillosus, P. capillosus ATCC 29799, Pseudobacterium capillosum, Pseudoflavonifractor, Pseudoflavonifractor Carlier et al. 2010, Pseudoflavonifractor capillosus, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799, Ristella capillosa
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