STRINGSTRING
BACCAP_00587 protein (Pseudoflavonifractor capillosus) - STRING interaction network
"BACCAP_00587" - DNA-binding helix-turn-helix protein in Pseudoflavonifractor capillosus
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BACCAP_00587DNA-binding helix-turn-helix protein (155 aa)    
Predicted Functional Partners:
nadE
NAD+ synthase (641 aa)
       
  0.836
cinA
Putative competence-damage inducible protein (420 aa)
       
  0.765
BACCAP_00854
DNA-binding helix-turn-helix protein (72 aa)
   
          0.700
BACCAP_01469
Inosine-uridine preferring nucleoside hydrolase (203 aa)
       
    0.667
BACCAP_00080
Inosine-uridine preferring nucleoside hydrolase (310 aa)
       
    0.667
BACCAP_00079
Inosine-uridine preferring nucleoside hydrolase (320 aa)
       
    0.667
BACCAP_00776
DNA-binding helix-turn-helix protein (360 aa)
   
          0.634
pncB
Nicotinate phosphoribosyltransferase ; Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP (483 aa)
       
  0.633
BACCAP_00741
HAD hydrolase, TIGR02254 family (232 aa)
         
  0.633
BACCAP_00558
5’-nucleotidase, C-terminal domain protein (1018 aa)
       
  0.632
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacillus capillosus, Bacteroides capillosus, Bacteroides capillosus ATCC 29799, P. capillosus, P. capillosus ATCC 29799, Pseudobacterium capillosum, Pseudoflavonifractor, Pseudoflavonifractor Carlier et al. 2010, Pseudoflavonifractor capillosus, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799, Ristella capillosa
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