STRINGSTRING
BACCAP_00623 protein (Pseudoflavonifractor capillosus) - STRING interaction network
"BACCAP_00623" - ArsC family protein in Pseudoflavonifractor capillosus
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BACCAP_00623ArsC family protein (110 aa)    
Predicted Functional Partners:
BACCAP_00624
Uncharacterized protein (72 aa)
              0.860
BACCAP_04816
Low molecular weight phosphotyrosine protein phosphatase (138 aa)
   
 
  0.716
BACCAP_03244
Low molecular weight phosphotyrosine protein phosphatase (135 aa)
   
 
  0.716
BACCAP_00841
Low molecular weight phosphotyrosine protein phosphatase (131 aa)
   
 
  0.716
BACCAP_00625
Uncharacterized protein (64 aa)
              0.651
rpoA
Transcriptase subunit alpha ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (315 aa)
       
      0.612
BACCAP_00622
Transcriptional regulator, MarR family (144 aa)
              0.509
BACCAP_04315
Uncharacterized protein (466 aa)
       
  0.494
dapF
Diaminopimelate epimerase ; Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan (280 aa)
       
    0.492
BACCAP_00626
Uncharacterized protein (598 aa)
         
  0.490
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacillus capillosus, Bacteroides capillosus, Bacteroides capillosus ATCC 29799, P. capillosus, P. capillosus ATCC 29799, Pseudobacterium capillosum, Pseudoflavonifractor, Pseudoflavonifractor Carlier et al. 2010, Pseudoflavonifractor capillosus, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799, Ristella capillosa
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