STRINGSTRING
BACCAP_00635 protein (Pseudoflavonifractor capillosus) - STRING interaction network
"BACCAP_00635" - Uncharacterized protein in Pseudoflavonifractor capillosus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BACCAP_00635Uncharacterized protein (200 aa)    
Predicted Functional Partners:
BACCAP_00634
Uncharacterized protein (99 aa)
              0.859
BACCAP_00636
Uncharacterized protein (42 aa)
              0.745
BACCAP_04415
Glyoxalase family protein (142 aa)
 
          0.635
BACCAP_00633
Cation diffusion facilitator family transporter (392 aa)
              0.568
BACCAP_01387
Uncharacterized protein (304 aa)
   
          0.526
rpoZ
Transcriptase subunit omega ; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta’ subunit thereby facilitating its interaction with the beta and alpha subunits (67 aa)
   
          0.480
BACCAP_00637
Repeat protein (1896 aa)
              0.470
BACCAP_00896
Transcriptional regulator, PadR family (139 aa)
   
          0.430
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacillus capillosus, Bacteroides capillosus, Bacteroides capillosus ATCC 29799, P. capillosus, P. capillosus ATCC 29799, Pseudobacterium capillosum, Pseudoflavonifractor, Pseudoflavonifractor Carlier et al. 2010, Pseudoflavonifractor capillosus, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799, Ristella capillosa
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