STRINGSTRING
BACCAP_00646 protein (Pseudoflavonifractor capillosus) - STRING interaction network
"BACCAP_00646" - Transglutaminase-like protein in Pseudoflavonifractor capillosus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BACCAP_00646Transglutaminase-like protein (304 aa)    
Predicted Functional Partners:
BACCAP_00648
Uncharacterized protein (105 aa)
 
          0.929
BACCAP_00643
Bacterial transcriptional activator domain protein (399 aa)
 
          0.928
BACCAP_00647
Bacterial type II secretion system domain protein F (349 aa)
 
     
  0.925
BACCAP_00940
Glutamine amidotransferase ; Catalyzes the synthesis of GMP from XMP (513 aa)
       
    0.894
BACCAP_00645
Sortase family protein (254 aa)
              0.860
BACCAP_00652
Twitching motility protein (354 aa)
 
          0.848
BACCAP_04193
Uncharacterized protein (158 aa)
 
     
  0.752
BACCAP_00558
5’-nucleotidase, C-terminal domain protein (1018 aa)
 
   
    0.705
BACCAP_00947
GMP synthase domain protein (153 aa)
       
    0.666
BACCAP_00946
GMP synthase (glutamine-hydrolyzing) (168 aa)
       
    0.666
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacillus capillosus, Bacteroides capillosus, Bacteroides capillosus ATCC 29799, P. capillosus, P. capillosus ATCC 29799, Pseudobacterium capillosum, Pseudoflavonifractor, Pseudoflavonifractor Carlier et al. 2010, Pseudoflavonifractor capillosus, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799, Ristella capillosa
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