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STRINGSTRING
EDN01522.1 protein (Pseudoflavonifractor capillosus) - STRING interaction network
"EDN01522.1" - Uncharacterized protein in Pseudoflavonifractor capillosus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDN01522.1Uncharacterized protein; Psort location- Cytoplasmic, score-8.96 (118 aa)    
Predicted Functional Partners:
EDN01523.1
annotation not available (126 aa)
              0.845
EDN01521.1
annotation not available (165 aa)
              0.845
EDN01524.1
Twitching motility protein; KEGG- pen-PSEEN2333 1.7e-21 xcpR-2; type II secretion pathway protein E K01509; COG- COG2805 Tfp pilus assembly protein, pilus retraction ATPase PilT; Psort location- Cytoplasmic, score-9.97 (354 aa)
              0.816
EDN01525.1
annotation not available (143 aa)
              0.764
EDN01520.1
annotation not available (105 aa)
              0.723
EDN01519.1
Bacterial type II secretion system domain protein F; COG- COG1459 Type II secretory pathway, component PulF; Psort location- CytoplasmicMembrane, score-9.46 (349 aa)
              0.644
recJ
Single-stranded-DNA-specific exonuclease RecJ; KEGG- sth-STH2439 1.2e-112 single-strand DNA-specific exonuclease K07462; COG- COG0608 Single-stranded DNA-specific exonuclease; Psort location- Cytoplasmic, score-8.96 (689 aa)
              0.441
EDN01518.1
COG- COG1305 Transglutaminase-like enzymes, putative cysteine proteases (304 aa)
              0.437
EDN01517.1
Sortase family protein; KEGG- cya-CYA_2262 0.00041 protein kinase K00870; COG- COG3764 Sortase (surface protein transpeptidase) (254 aa)
              0.437
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacteroides capillosus ATCC 29799, P. capillosus ATCC 29799, Pseudoflavonifractor capillosus, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus ATCC29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799
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